miRBase entry: mtr-MIR2603

Dead hairpin entry

Stem-loop mtr-MIR2603


Accession
MI0011854
Description
Medicago truncatula mtr-MIR2603 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

23672 reads, 219.0 reads per million, 111 experiments
uuggucccugcacuuuuuuguuugguAUUGGUCCCUGCACUUUGUAAAAAuauugguauugguuccucuguuaacuuucuguuaaaaaaaaaacacaaaaccaacggagugcggcccaaucauuucacgcccacguggcaccaauaucaauauuuuuacaaauugcagggacaaauaccaauauuuuacaaagugcagggcccaauaccaauaguuuuggguuuuuuuuuuacagaaaguuaauagagggaccaauaccaauauuuuuacaaagugcaaggaccaAUUCCAAACAAAAAAAAGUGUAGGgaccaau
(((((((((((((((((((((((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((.((((((....(((.((.(((((........((((....))))((((.......((((((.............((........)))))))).......)))).))))))).).))....)))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))).)))))))..)))))))))))))))))).

Structure
-                  --       u        C                                               u           a      caac  - g  c     aaucauuucacgcccacgug    caauauc      uuuacaaauugca  gac 
 uuggucccugcacuuuuu  uguuugg AUUGGUCC UGCACUUUGUAAAAAuauugguauugguuccucuguuaacuuucugu aaaaaaaaaac caaaac    gg a ug ggccc                    gcac       aauauu             gg   a
 ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    || | || |||||                    ||||       ||||||             ||    
 aaccagGGAUGUGAAAAA  ACAAACC UAaccagg acgugaaacauuuuuauaaccauaaccagggagauaauugaaagaca uuuuuuuuuug guuuug    cc u ac ccggg                    cgug       uuauaa             cc   a
u                  AA       U        a                                               -           g      auaa  a a  -     -------------------a    aaacauu      -------------  aua