Stem-loop sequence mtr-MIR2604

Accession

MI0011855 (change log)

Description

Medicago truncatula miR2604 stem-loop

Gene family

MIPF0001276; MIR5267

Stem-loop

   -    g                 a                         a c       uagaguguauuuaaccacuguuuaguuauuuauuugcuaaaauacuccuucuaaaaaauaaguggguguauucuagcaaaugcc 
5'  guuu cuagaacacauccacua uuuuuaugugggaguguuuuagcaa g uauaacu                                                                                    u
    |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||                                                                                    a
3'  uaaa gaucuugugugggugau aaaaauacacccucacaaaaucguu c auauuga                                                                                    u
   u    a                 c                         - a       uuuuuuaauuauuuauguggaauuccacauacaacgauauugugugaaagauuuuuuuguucacccacacaagaucguuuagaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 5273845-5274131 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011855

Mature sequence mtr-miR2604

• Accession: MIMAT0013308
• Sequence: 21 - uaauuuuuaugugggaguguu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).