miRBase entry: mtr-MIR2604

Dead hairpin entry

Stem-loop mtr-MIR2604


Accession
MI0011855
Description
Medicago truncatula mtr-MIR2604 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

44666 reads, 429.0 reads per million, 111 experiments
guuugcuagaacacauccacuaauuuuUAUGUGGGAGUGUUUUAGCAAAGCuauaacuuagaguguauuuaaccacuguuuaguuauuuauuugcuaaaauacuccuucuaaaaaauaaguggguguauucuagcaaaugccuauaagAUUUGCUAGAACACACCCACUuguuuuuuuagaaaguguguuauagcaacauacaccuuaagguguauuuauuaauuuuuuaguuauaacuugcuaaaacacucccacauaaaaacuaguggguguguucuagaaaauu
((((.(((((((((((((((((.(((((((((((((((((((((((((.(.(((((((.((((((((..((((.........))))..)))((((((.(((((.(.(((((((((((((((((((((.(((((((((((.........))))))))))).))))))))))).)))))))))).).))))).)))))).(((((((....)))))))......)))))..))))))).)))))))))))))))))))))))))).))))))))))))))))).)))).

Structure
-    g                 a                         A C       -u     guauuuaaccacuguuuaguuauuuau      a     u c          -           a           gcc 
 guuu cuagaacacauccacua uuuuUAUGUGGGAGUGUUUUAGCAA G uauaacu  agagu                           uugcua aauac c uucuaaaaaa uaagugggugu uucuagcaaau   u
 |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||  |||||                           |||||| ||||| | |||||||||| ||||||||||| |||||||||||   a
 uaaa gaucuugugugggugau aaaaauacacccucacaaaaucguu c auauuga  uuuua                           aacgau uugug g aagauuuuuu guUCACCCACA AAGAUCGUUUA   u
u    a                 c                         - a       uu     --auuauuuauguggaauuccacauac      a     u a          u           C           gaa