Stem-loop mtr-MIR2605

Accession

MI0011856

Description

Medicago truncatula mtr-MIR2605 precursor miRNA

Sequence

agauguacacuuaaACUUAGUUUAUAUGACCUACuuaaacuggguuuacaugagcuacuuaaacuaaguuuacaugaucuacuuaaacugaguuuaaauauguacacuuaaacuuaguuuacaugaccuacuuaaaauaaguuuacauguacauacuuaaacugagauuacauagaaucauugaacaagguugaacuuuuaaauguacacuuaaacucgguuuacaugaccuauuuaaacuuaguuuaaguauguacacuuaaacucaguuuacaugaccucc
.((.((.((..((((((.((((((..((((.((((((((((((((((((((..........((((..(((((.((((((((..(((.((.(((((((.((((((((..((((((((.((((...........)))).))))))))..)))))))).))))))).)).)))..))).))))))))))..))))..........)))))...........((((.....))))......))))))))))))))).)).))..)))))).))))))..)))).)).

Structure

a  u  a  cu      U      UA  -  C               ------------------------------     gagcuacuua    aa     c     -   cu   a  g       a        cu        g    caug 
 ga gu ca  uaaACU AGUUUA  UG AC UACuuaaacuggguu                              uacau          aacu  guuua augau cua  uaa cu aguuuaa uauguaca  uaaacuua uuua    a
 || || ||  |||||| ||||||  || || |||||||||||||||                              |||||          ||||  ||||| ||||| |||  ||| || ||||||| ||||||||  |||||||| ||||    c
 cu ca gu  auuuga ucaaau  ac ug augaauuugauucaa                              augua          uugg  caagu uacua gau  auu ga ucaaauu auacaugu  auuugaau aaau    c
c  c  -  ac      c      uc  a  u               auuuauccaguacauuuggcucaaauucac     aauuuucaag    aa     -     a   ac   a  g       c        ac        a    ucau 

Annotation confidence Not enough data

Genome context

chr8: 31560873-31561155 [+]

Mature mtr-miR2605

• Accession: MIMAT0013309
• Description: Medicago truncatula mtr-miR2605 mature miRNA
• Sequence: 15 - ACUUAGUUUAUAUGACCUAC - 34
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796