Stem-loop sequence mtr-MIR2605

Accession

MI0011856 (change log)

Description

Medicago truncatula miR2605 stem-loop

Stem-loop

   -----------------------------agauguacacuuaaacuuaguuuauaugaccuacuuaaacuggguuuacaugagcuacuuaaacuaaguuuac     -   cu   a  g       a        cu        g    caug 
5'                                                                                                       augau cua  uaa cu aguuuaa uauguaca  uaaacuua uuua    a
                                                                                                         ||||| |||  ||| || ||||||| ||||||||  |||||||| ||||    c
3'                                                                                                       uacua gau  auu ga ucaaauu auacaugu  auuugaau aaau    c
   ccuccaguacauuugacucaaauucacauguaugaauuugauucaaauuuauccaguacauuuggcucaaauucacauguaaauuuucaaguuggaacaagu     a   ac   a  g       c        ac        a    ucau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 31560873-31561155 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011856

Mature sequence mtr-miR2605

• Accession: MIMAT0013309
• Sequence: 15 - acuuaguuuauaugaccuac - 34
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).