Stem-loop sequence mtr-MIR2609a

Accession MI0011862
Description Medicago truncatula miR2609a stem-loop
Gene family MIPF0000864; MIR2609
Stem-loop 
ggcc       ---   u      g  -a     -ucu  c  g       aaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaagu 
    uuccauu   ggc uuggaa ua  uaggu    ca uu uuuggca                                                                               u
    |||||||   ||| |||||| ||  |||||    || || |||||||                                                                                
    aagguaa   ucg gauuuu gu  aucca    gu aa aaaccgu                                                                               a
acuu       aag   u      g  ac     uauc  u  g       aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucg
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr2: 13198495-13198751 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR2609a
mtr-MIR5242 MtChr2: 13188883-13188948 [-]
mtr-MIR2609a MtChr2: 13198495-13198751 [+]

Mature sequence mtr-miR2609a

Accession MIMAT0013315
Sequence

17 -  

uggaaguaauagguucucacu

 - 37

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Evidence experimental; 454 [1]

References

1
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).