Stem-loop sequence mtr-MIR2585c

Accession

MI0011869 (change log)

Description

Medicago truncatula miR2585c stem-loop

Gene family

MIPF0000820; MIR2585

Stem-loop

   u                            u           u    ac  g       auca                 a    u  ga  a         c         acuaauuugaugauguggcaaucacugccaaacaugaaauuccaauuuugcccuuaa 
5'  aggggucguuuaaaaauuggucccugua ucgcuaauccu gcaa  ua ccuugca    uuaaucauuuaaaauuu gucc uu  cc acuuaauca ugccacguc                                                         g
    |||||||||||||||||||||||||||| ||||||||||| ||||  || |||||||    ||||||||||||||||| |||| ||  || ||||||||| |||||||||                                                         a
3'  uccccagcaaauuuuuaaccagggacau agcgauuagga cguu  au gggacgu    aauuaguaaauuuuaaa cagg ag  gg ugaauuagu acggugcgg                                                         a
   -                            u           c    aa  g       aaca                 g    u  ag  g         a         uguacuuuaagguuaaaaugggguccuaaagguuaggaaaaaguuauaaaacaggag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 11514537-11514874 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011869

Mature sequence mtr-miR2585c

• Accession: MIMAT0013322
• Sequence: 298 - caggauuagcgauuacagggac - 319
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).