Stem-loop sequence mtr-MIR2585d

Accession

MI0011870 (change log)

Description

Medicago truncatula miR2585d stem-loop

Gene family

MIPF0000820; MIR2585

Stem-loop

   u                                         gu     gu         a                             a            cc  a                          a                      -      -a     agaagaugaagac 
5'  aggcgucauuuaaaaauuagucccuguaaucguuaauccug  aauuu  ccuugcauu uuuaaucauuuaaaauuucguccuuugac aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga             a
    |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||             g
3'  uccgcaguaaauuuuuaaucagggacauuagcgauuaggac  uuaaa  ggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu             g
   -                                         ug     ug         c                             g            ca  g                          c                      u      gc     acuguaaaaauag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 19511859-19512226 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011870

Mature sequence mtr-miR2585d

• Accession: MIMAT0013323
• Sequence: 328 - caggauuagcgauuacagggac - 349
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).