miRBase entry: mtr-MIR2585d

Dead hairpin entry

Stem-loop mtr-MIR2585d


Accession
MI0011870
Description
Medicago truncatula mtr-MIR2585d precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

67681 reads, 536.0 reads per million, 111 experiments
uaggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauuauuuaaucAUUUAAAAUUUCGUCCUUUGACaaacuuaaucacucccaagucaucaaauuagcaaaauggcauggaaauggacaaaaauacccucgucuuuauuaugagaagaagaugaagacagggauaaaaaugucauuucacgaauggaugacgaggguauuuuuguccauucccaugucauuuugcuaauuugaugacgugacagugauuaaguuggucaaaggacgaaauuuuaaaugauuaaacaaugcaaggguaaauuguCAGGAUUAGCGAUUACAGGGACuaauuuuuaaaugacgccu
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.((((((((((((..((.((((((((((((((((((((((((((.((((((((((((((((((((((((((((.(((((..........((((..........)))).)))))..)))))).)))))))))))))))))))))).)))))))))))))))))))))))))).))..)))))))))))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
u                                                           a                             a            cc  a                          a                      -      -a     agaagaugaa    ggga 
 aggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauu uuuaaucAUUUAAAAUUUCGUCCUUUGAC aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga          gaca    u
 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||          ||||     
 uccgcaguaaauuuuuaauCAGGGACAUUAGCGAUUAGGACuguuaaaugggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu          cugu    a
-                                                           c                             g            ca  g                          c                      u      gc     ---------a    aaaa