miRBase entry: mtr-MIR2585d

Stem-loop mtr-MIR2585d


Accession
MI0011870
Description
Medicago truncatula mtr-MIR2585d precursor miRNA
Gene family
MIPF0000820; MIR2585


Sequence

uaggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauuauuuaaucauuuaaaauuucguccuuugacaaacuuaaucacucccaagucaucaaauuagcaaaauggcauggaaauggacaaaaauacccucgucuuuauuaugagaagaagaugaagacagggauaaaaaugucauuucacgaauggaugacgaggguauuuuuguccauucccaugucauuuugcuaauuugaugacgugacagugauuaaguuggucaaaggacgaaauuuuaaaugauuaaacaaugcaaggguaaauuguCAGGAUUAGCGAUUACAGGGACuaauuuuuaaaugacgccu
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.((((((((((((..((.((((((((((((((((((((((((((.((((((((((((((((((((((((((((.(((((..........((((..........)))).)))))..)))))).)))))))))))))))))))))).)))))))))))))))))))))))))).))..)))))))))))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
u                                                           a                             a            cc  a                          a                      -      -a     agaagaugaa    ggga 
 aggcgucauuuaaaaauuagucccuguaaucguuaauccugguaauuuguccuugcauu uuuaaucauuuaaaauuucguccuuugac aacuuaaucacu  ca gucaucaaauuagcaaaauggcaugg aauggacaaaaauacccucguc uuuauu  ugaga          gaca    u
 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||          ||||     
 uccgcaguaaauuuuuaauCAGGGACAUUAGCGAUUAGGACuguuaaaugggaacguaa aaauuaguaaauuuuaaagcaggaaacug uugaauuaguga  gu caguaguuuaaucguuuuacuguacc uuaccuguuuuuaugggagcag agguaa  acuuu          cugu    a
-                                                           c                             g            ca  g                          c                      u      gc     ---------a    aaaa 


Annotation confidence Not enough data
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Genome context
chr6: 19511859-19512226 [+]

Database links

Mature mtr-miR2585d

Accession MIMAT0013323
Description Medicago truncatula mtr-miR2585d mature miRNA
Sequence 328 - CAGGAUUAGCGAUUACAGGGAC - 349
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796