miRBase entry: mtr-MIR2613

Dead hairpin entry

Stem-loop mtr-MIR2613


Accession
MI0011874
Description
Medicago truncatula mtr-MIR2613 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

675 reads, 8.0 reads per million, 109 experiments
aaucgaUCUGAGAAGAAGGUUGAUUGGCGGcgguggugguggugugaauacaguuaugaggagaaaaaugguuguuuuuaucggaggaugguggugaacggagaucagCGACGGUCGCCGGUGGUCAAUGGUcggaaagaagagcggug
.((((.(((.....((..((((((((.(((((((.((.(((((.(...(((..((((...((.((((((....)))))).)).....))))..))).....).)))).).)).))))))).))))))))..)).......))).)))).

Structure
a    a   --GAGAA  AG        G       g  g -    g --gaa   ag    --gag  g      g 
 aucg UCU       GA  GUUGAUUG CGGcggu gu g uggu u     uac  uuau     ga aaaaau g
 |||| |||       ||  |||||||| ||||||| || | |||| |     |||  ||||     || ||||||  
 uggc aga       cU  UAACUGGU GCCGCUG CA C acua a     gug  ggua     cu uuuuug u
g    g   agaaagg  GG        G       G  G g    g ggcaa   gu    ggagg  a      u