miRBase entry: mtr-MIR2615a

Stem-loop mtr-MIR2615a


Accession
MI0011876
Description
Medicago truncatula mtr-MIR2615a precursor miRNA
Gene family
MIPF0000898; MIR2615


Sequence

cguuuaaaaccucuuguccguauuuuaaaauuguucacguucccuuuuuuucguuguuuuuaccauuuaaaguucguguuuuuuuugucuuuagucauucaaaaaaguuuuuuuuacguuaaaucaacguucgcguuucacgacguuuaaaaacgucucacuuucauuuuuacgacgcauaguuuuuuuuaucguaacgaucacgucaaaaaagagaaggCCUGAUCGCAUUUUAAAAGGCguuuuuuuuauuaauca
..................(((.(((((((((((.((((.(((.(((((((.(((.(((.((((.((..((((...((((.(((((((............)))))))((((((...(((((.....((((....))))....)))))..))))))(((................)))))))....))))..)).)))).))).)))..))))))).))).)..))).)).))))))))).)))................

Structure
cguuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    -uuc    uuuuuuugucuuuagucauucaaaaaa      uuu     aaauc    u 
                  cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag    gugu                           guuuuu   acguu     aacg u
                  ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||    ||||                           ||||||   |||||     ||||  
                  gCG AAAAUUUUA GC AGU  g aag gaaaaaa  gca uag aaug ua  uuuu    uacg                           caaaaa   ugcag     uugc c
--acuaauuauuuuuuuu   G         C  U   CC g   a       cu   c   c    c  uu    uuga    -----cagcauuuuuacuuucacucug      -uu     -cacu    g 


Annotation confidence Not enough data
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Genome context
chr5: 3236093-3236350 [-]

Database links

Mature mtr-miR2615a

Accession MIMAT0013329
Description Medicago truncatula mtr-miR2615a mature miRNA
Sequence 221 - CCUGAUCGCAUUUUAAAAGGC - 241
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796