Stem-loop sequence mtr-MIR2615b

Accession

MI0011877 (change log)

Description

Medicago truncatula miR2615b stem-loop

Gene family

MIPF0000898; MIR2615

Stem-loop

   guuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    uu -    uuuuuuugucuuuagucauucaaaaaaguuuuuuuuuacguuaaauca 
5'                  cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag  c gugu                                                a
                    ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||  | ||||                                                 
3'                  gcg aaaauuuua gc agu  g aag gaaaaaa  gca uag aaug ua  uuuu  g uacg                                                c
   -acuaauuauuuuuuuu   g         c  u   cc g   a       cu   c   c    c  uu    uu a    cagcauuuuuacuuucacucugcaaaaauuugcagcacuuugcgcuug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 3250863-3251120 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011877

Mature sequence mtr-miR2615b

• Accession: MIMAT0013330
• Sequence: 221 - ccugaucgcauuuuaaaaggc - 241
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).