Stem-loop mtr-MIR2615b

Accession

MI0011877

Description

Medicago truncatula mtr-MIR2615b precursor miRNA

Gene family

MIPF0000898; MIR2615

Sequence

guuuaaaaccucuuguccguauuuuaaaauuguucacguucccuuuuuuucguuguuuuuaccauuuaaaguucguguuuuuuuugucuuuagucauucaaaaaaguuuuuuuuuacguuaaaucaacguucgcguuucacgacguuuaaaaacgucucacuuucauuuuuacgacgcauaguuuuuuuuaucguaacgaucacgucaaaaaagagaaggCCUGAUCGCAUUUUAAAAGGCguuuuuuuuauuaauca
.................(((.(((((((((((.((((.(((.(((((((.(((.(((.((((.((..((((...((((.(((((((............)))))))((((((....(((((.....((((....))))....)))))..))))))(((................)))))))....))))..)).)))).))).)))..))))))).))).)..))).)).))))))))).)))................

Structure

guuuaaaaccucuuguc   a         -  u   -- g   c       -u   u   u    c  uu    -uuc    uuuuuuugucuuuagucauucaaaaaa      uuuu     aaauc    u 
                 cgu uuuuaaaau ug uca  c uuc cuuuuuu  cgu guu uuac au  aaag    gugu                           guuuuu    acguu     aacg u
                 ||| ||||||||| || |||  | ||| |||||||  ||| ||| |||| ||  ||||    ||||                           ||||||    |||||     ||||  
                 gCG AAAAUUUUA GC AGU  g aag gaaaaaa  gca uag aaug ua  uuuu    uacg                           caaaaa    ugcag     uugc c
-acuaauuauuuuuuuu   G         C  U   CC g   a       cu   c   c    c  uu    uuga    -----cagcauuuuuacuuucacucug      --uu     -cacu    g 

Annotation confidence Not enough data

Genome context

chr5: 3250863-3251120 [-]

Mature mtr-miR2615b

• Accession: MIMAT0013330
• Description: Medicago truncatula mtr-miR2615b mature miRNA
• Sequence: 221 - CCUGAUCGCAUUUUAAAAGGC - 241
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796