Stem-loop sequence mtr-MIR2615c

Accession

MI0011878 (change log)

Description

Medicago truncatula miR2615c stem-loop

Gene family

MIPF0000898; MIR2615

Stem-loop

   --------------------------------ccguauuuuaaaaugguucacguucccuuuuauucguuuuuuu   ccauuu     u    --uuucu   --c     uc  uca      u 
5'                                                                            gua      aaagu uggg       ugu   uuuag  gu   aaaagu u
                                                                              |||      ||||| ||||       |||   |||||  ||   ||||||  
3'                                                                            cau      uuuca acuc       gca   aaauu  ca   uuuuua u
   ugcggaaaauuuuacgcuaguccggaagagaaaaaaacugcacuagcaaugcuaauuuuuuuuucugauacgcug   uuuuac     c    uacgcuu   acu     ua  ---      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 2027418-2027632 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2615c

• mtr-MIR2615c: chr7: 2027418-2027632 [+]
• mtr-MIR2610b: chr7: 2035062-2035473 [+]

Database links

• miRBase Tracker:MI0011878

Mature sequence mtr-miR2615c

• Accession: MIMAT0013331
• Sequence: 193 - ccugaucgcauuuuaaaaggc - 213
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).