Stem-loop sequence mtr-MIR2616

Accession

MI0011879 (change log)

Description

Medicago truncatula miR2616 stem-loop

Stem-loop

   u           u gu   g c     accacggguauggauuuuguugccaugccuaccuccaagcuacuaaagacaccuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauu 
5'  caaauuggguu g  ucg g ggaua                                                                                                                        g
    ||||||||||| |  ||| | |||||                                                                                                                         
3'  guuugacucaa c  agu c ccugu                                                                                                                        g
   u           u ug   g -     aauaauuuuuuuaauuguuaaaaccaauaaugauguuucgugucucaacauagcagaaaacauauauauuuuuuuuccuuuauuguauccuuaauuccuuguuuaaaucccuacaacgua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 5651277-5651571 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011879

Mature sequence mtr-miR2616

• Accession: MIMAT0013332
• Sequence: 5 - auuggguuugguucgggcggau - 26
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).