Stem-loop sequence mtr-MIR1509b

Accession

MI0011880 (change log)

Description

Medicago truncatula miR1509b stem-loop

Gene family

MIPF0000771; MIR1509

Literature search

2 open access papers mention mtr-MIR1509b
(4 sentences)

Stem-loop

   u       u  c   cu       u       u     c   u  ccau       g 
5'  ugaucca ug auu  uuuaauc aggaaau acacu gag ga    gagauga g
    ||||||| || |||  ||||||| ||||||| ||||| ||| ||    ||||||| a
3'  acuaggu ac uaa  aaauuag uccuuua uguga cuc cu    cucuauu u
   u       u  u   ag       u       -     u   u  cucu       a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 22804649-22804764 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011880

Mature sequence mtr-miR1509b

• Accession: MIMAT0013333
• Sequence: 19 - uuaaucuaggaaauuacacucg - 40
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).