Stem-loop sequence mtr-MIR2618b

Accession

MI0011885 (change log)

Description

Medicago truncatula miR2618b stem-loop

Gene family

MIPF0001016; MIR2618

Stem-loop

   agcauguaccauguacgaauuuggguugcauucugacuagguaucucuuucaaauuauacguaaauauauuuaaaagagauacguauguauauaa   gu   u       u       uuaugu            -----aau        
5'                                                                                                gag  uag gugaauu aauuuac      uuaaucuagguu        guaaauu 
                                                                                                  |||  ||| ||||||| |||||||      ||||||||||||        |||||| u
3'                                                                                                cuu  auu cauuuaa uuaaaug      aauuagauuuaa        cauuuaa 
   -------auguaauuggaucuaacuugcaugcauuugacuuaagugugauuggagaauauauguauacaauugaauuaaauguaauugaauuuaa   gu   -       c       -----u            caaguauu        

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 28342357-28342643 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011885

Mature sequence mtr-miR2618b

• Accession: MIMAT0013338
• Sequence: 249 - gugaauucaguuuacguacguu - 270
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).