Stem-loop sequence mtr-MIR2620

Accession

MI0011887 (change log)

Description

Medicago truncatula miR2620 stem-loop

Stem-loop

   -   ---u   c   -   uu   gg    u     gacuuu   cc      aaaguauuguggggaaugugaccgcauguaacagucugaguuuuagugaugaagac 
5'  uac    aga cag gcu  ugu  auua gaugu      ggg  aguuug                                                        c
    |||    ||| ||| |||  |||  |||| |||||      |||  ||||||                                                         
3'  aug    ucu guc cgg  aca  uagu uugua      ucc  ucagac                                                        u
   a   uaau   c   u   cc   ga    c     accuau   --      aagacguuucaugucucuacucauugcggacuaacacgaagaaggggaggcgaccc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 13118436-13118648 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011887

Mature sequence mtr-miR2620

• Accession: MIMAT0013340
• Sequence: 181 - uucugauagacaccggcucugc - 202
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).