miRBase entry: mtr-MIR2623

Stem-loop mtr-MIR2623


Accession
MI0011890
Description
Medicago truncatula mtr-MIR2623 precursor miRNA


Sequence

auuaacaaauaaauaccuUCGGCUGUACUGUCCUUCAUGaacaaauuuggccuucuaaacaaauuguuuagauagacuuuguuguuuaggauggaccguguagccuaaguuauuuuauguuaag
.((((((...(((((.(((.((((((((.((((.((.(((((((....(((..((((((((...))))))))..).))...))))))).)).)))).)))))))).))).)))))..)))))).

Structure
a      aau     c   C        U    U  A       auuu  - cu        a 
 uuaaca   aaaua cuU GGCUGUAC GUCC UC UGaacaa    gg c  ucuaaaca  
 ||||||   ||||| ||| |||||||| |||| || |||||||    || |  |||||||| a
 aauugu   uuuau gaa ccgaugug cagg ag auuuguu    uc g  agauuugu  
g      -au     u   u        c    u  g       -guu  a au        u 


Annotation confidence Not enough data
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Genome context
chr5: 31771069-31771192 [-]

Database links

Mature mtr-miR2623

Accession MIMAT0013343
Description Medicago truncatula mtr-miR2623 mature miRNA
Sequence 19 - UCGGCUGUACUGUCCUUCAUG - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796