Stem-loop sequence mtr-MIR2623

Accession

MI0011890 (change log)

Description

Medicago truncatula miR2623 stem-loop

Stem-loop

   a      aau     c   c        u    u  a       auuu  - cu       a 
5'  uuaaca   aaaua cuu ggcuguac gucc uc ugaacaa    gg c  ucuaaac a
    ||||||   ||||| ||| |||||||| |||| || |||||||    || |  ||||||| a
3'  aauugu   uuuau gaa ccgaugug cagg ag auuuguu    uc g  agauuug u
   g      -au     u   u        c    u  g       -guu  a au       u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 31771069-31771192 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011890

Mature sequence mtr-miR2623

• Accession: MIMAT0013343
• Sequence: 19 - ucggcuguacuguccuucaug - 39
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).