Stem-loop sequence mtr-MIR2625

Accession

MI0011893 (change log)

Description

Medicago truncatula miR2625 stem-loop

Stem-loop

   ac              ac  uccaa     a      caccucauuaauccu      cagca      uuuucauaucguggcacguuccagacuuu 
5'   caucgugccacguu  ga     ucgug cacgau               acgugg     gacaaa                             a
     ||||||||||||||  ||     ||||| ||||||               ||||||     ||||||                              
3'   guagcacggugcaa  cu     agcac gugcua               ugcacc     cuguuu                             u
   --              au  uguag     c      ---------acaacu      -----      cuuaaacggugaccuuuaaaacacggugc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 2760406-2760587 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011893

Mature sequence mtr-miR2625

• Accession: MIMAT0013346
• Sequence: 2 - ccaucgugccacguuacgaucc - 23
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).