miRBase entry: mtr-MIR2592l

Stem-loop mtr-MIR2592l


Accession
MI0011900
Description
Medicago truncatula mtr-MIR2592l precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592l
(2 sentences)

Sequence

ggguaauucaaacuugccaaacgaccaugacucaagcauuuugcccaacguucauguuuuuccuuugaaaagauuaaauucuuguuaugcugguuuagaugaagguauuaagugucaaggaaugaacaucauuucauuggcacuugaauaccaccaucuaaagcaagucuaacaaaauuuauucuuuucaaaggaaaaacaugaaugcggggcgAAAUGCUUGAGUCCUGUUGUUuggcaaguuugacuuuacc
.(((((.((((((((((((((((((...((((((((((((((((((..(((((((((((((((((((((((((.((((((.((((((.((((.((((((((..((((((((((((((((((((((...))))))).)))))))))).)))))..)))))))).).))).)))))))))))).)))))))))))))))))))))))))..))))))))))))))))))..))))))))))))))))))..)))))

Structure
g     -u                  cau                  aa                         u      c      u   - g        aa     -          -       a 
 gguaa  ucaaacuugccaaacgac   gacucaagcauuuugccc  cguucauguuuuuccuuugaaaaga uaaauu uuguua gcu g uuuagaug  gguau uaagugucaa ggaauga  
 |||||  ||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||| ||| | ||||||||  ||||| |||||||||| ||||||| c
 ccauu  aguuugaacgguUUGUUG   CUGAGUUCGUAAAgcggg  guaaguacaaaaaggaaacuuuucu auuuaa aacaau uga c aaaucuac  ccaua guucacgguu cuuuacu  
-     uc                  -UC                  gc                         u      -      c   a g        ca     a          a       a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 38243118-38243371 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592l

Accession MIMAT0013353
Description Medicago truncatula mtr-miR2592l mature miRNA
Sequence 215 - AAAUGCUUGAGUCCUGUUGUU - 235
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796