miRBase entry: mtr-MIR2111b

Stem-loop mtr-MIR2111b


Accession
MI0011905
Description
Medicago truncatula mtr-MIR2111b precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
2 open access papers mention mtr-MIR2111b
(8 sentences)

Sequence

auauugggauuugaugggaUAAUCUGCAUCCUGAGGUUUAgaacaacaaaugcguaauuauaucuaagccuuggaaugcagauuaucucuuccuuaucaccaaugc
.(((((((((..((.((((((((((((((.((((((((((((....................)))))))))))).)))))))))))))).))...))).)))))).

Structure
a      -   -uu  u              C            acaacaaau 
 uauugg gau   ga gggaUAAUCUGCAU CUGAGGUUUAga         g
 |||||| |||   || |||||||||||||| ||||||||||||          
 guaacc cua   cu cucuauuagacgua gguuccgaaucu         c
c      a   uuc  u              a            auauuaaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR2111b

Accession MIMAT0013358
Description Medicago truncatula mtr-miR2111b mature miRNA
Sequence 20 - UAAUCUGCAUCCUGAGGUUUA - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796