Stem-loop sequence mtr-MIR2111j

Accession

MI0011907 (change log)

Description

Medicago truncatula miR2111j stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111j
(8 sentences)

Stem-loop

   u      --       uua            c        u ua   auau 
5'  uauugg  guaagga   gauaaucugcau cugagguu a  aca    u
    ||||||  |||||||   |||||||||||| |||||||| |  |||     
3'  guaacc  uauuccu   cuauuagacgua gauuccaa u  ugu    u
   c      gu       uuc            a        u uc   cgau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 16649192-16649293 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2111j

• mtr-MIR2111h: chr7: 16655725-16655830 [-]
• mtr-MIR2111i: chr7: 16649857-16649962 [-]
• mtr-MIR2111j: chr7: 16649192-16649293 [-]
• mtr-MIR2111k: chr7: 16644233-16644366 [-]
• mtr-MIR2111l: chr7: 16644069-16644155 [-]

Database links

• miRBase Tracker:MI0011907

Mature sequence mtr-miR2111j

• Accession: MIMAT0013360
• Sequence: 20 - uaaucugcauccugagguuua - 40
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).