Stem-loop sequence mtr-MIR2628

Accession

MI0011909 (change log)

Description

Medicago truncatula miR2628 stem-loop

Stem-loop

   a   gacaa     c    ca    a   u             ccccaaccaauacauauuagccacauaagc 
5'  ggu     cuaag uacu  ugaa gaa gaugaguaauuua                              a
    |||     ||||| ||||  |||| ||| |||||||||||||                              c
3'  cca     gauuu augg  acuu cuu uuacucguuaaau                              a
   a   aaaaa     a    aa    -   -             aaacaccucaguuuuaucaaguacuuauau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 13971174-13971320 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011909

Mature sequence mtr-miR2628

• Accession: MIMAT0013362
• Sequence: 20 - caugaaagaaugaugaguaa - 39
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).