Stem-loop mtr-MIR2628

Accession

MI0011909

Description

Medicago truncatula mtr-MIR2628 precursor miRNA

Sequence

aggugacaacuaagcuacuCAUGAAAGAAUGAUGAGUAAuuuaccccaaccaauacauauuagccacauaagcacauauauucaugaacuauuuugacuccacaaauaaauugcucauuuucuucaaagguaauuuagaaaaaacca
.(((.....(((((.((((..((((.(((.(((((((((((((.............((((..((.......))..)))).............((((......))))))))))))))))))))))))..)))).))))).....))).

Structure

a   gacaa     c    CA    A   U             --------------ccccaaccaauac    ua  ca 
 ggu     cuaag uacu  UGAA GAA GAUGAGUAAuuua                           auau  gc  c
 |||     ||||| ||||  |||| ||| |||||||||||||                           ||||  ||  a
 cca     gauuu augg  acuu cuu uuacucguuaaau                           uaua  cg  u
a   aaaaa     a    aa    -   -             aaacaccucaguuuuaucaaguacuua    ca  aa 

Annotation confidence Not enough data

Genome context

chr6: 13971174-13971320 [+]

Mature mtr-miR2628

• Accession: MIMAT0013362
• Description: Medicago truncatula mtr-miR2628 mature miRNA
• Sequence: 20 - CAUGAAAGAAUGAUGAGUAA - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796