Stem-loop sequence mtr-MIR2630a

Accession

MI0011917 (change log)

Description

Medicago truncatula miR2630a stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630a
(2 sentences)

Stem-loop

   -                u                 g             a            cau         aaa       cua      ----------uc         -a  a 
5'  cccugcaaauauagaa auuugguuuugguccuu guauuuuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguc  uc u
    |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||  || u
3'  gggacguuuauauuuu uaaaccaaaaccaggaa cauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucag  ag u
   a                u                 g             c            acu         cua       aac      caucuuauaaac         gg  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 40621429-40621657 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011917

Mature sequence mtr-miR2630a

• Accession: MIMAT0013370
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).