miRBase entry: mtr-MIR2630c

Stem-loop mtr-MIR2630c


Accession
MI0011919
Description
Medicago truncatula mtr-MIR2630c precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630c
(2 sentences)

Sequence

ccauucaaauaaagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucuuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuaccuauuacaaagaccaaauccaauaugaaucuauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaaauuuuuuauauuugcaguga
.(((((((((((((((..((((((((((((((((((((((((((((((.((((((((((((...(((((((((...((((((....(((((((.(((((((((((........))))))))))).))..........)))))....))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))..))))).)))))).)))).

Structure
c    -      -     ua                              a            cau         aaa      ccua     ----------  c           cgu 
 cauu caaaua aagaa  uuUGGUUUUGGUCCUUGGUAUUUuguuuua ucuuuguaaaau   uucauauug   uugguc    uaaua          uu auuuuaguccu   u
 |||| |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||   |||||||||   ||||||    |||||          || |||||||||||    
 guga guuuau uuuuu  aaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccag    auuau          aa uaaaaucaggg   u
a    c      a     ua                              c            ucu         cua      aaac     ccaucuuaua  c           agu 


Annotation confidence Not enough data
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Genome context
chr1: 23684220-23684449 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2630c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2630c

Accession MIMAT0013372
Description Medicago truncatula mtr-miR2630c mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796