Stem-loop sequence mtr-MIR2630y

Accession

MI0011922 (change log)

Description

Medicago truncatula miR2630y stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630y
(2 sentences)

Stem-loop

   a           a  a                                              a           u      a         guagaauauu g          c  a 
5'  cugcaaauaua aa auuugguuuugguccuugguauuuuguuuuaguccuuguaaaauug uucauauugga uugguc uuguaauau          u auuuuagucc uc a
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||          | |||||||||| || a
3'  gacguuuauau uu uaaaccaaaacuaggaaccauaaaacaaaauuaggaacauuuuagu aaguauaacuu aaccag gauauuaua          a uaaaaucagg ag a
   g           c  a                                              a           u      g         ---------- g          -  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 11627635-11627860 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011922

Mature sequence mtr-miR2630y

• Accession: MIMAT0013375
• Sequence: 20 - ugguuuugguccuugguauuu - 40
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).