Dead hairpin entry

Stem-loop mtr-MIR2630g

Accession

MI0011926

Description

Medicago truncatula mtr-MIR2630g precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630g
(2 sentences)

Sequence

11972 reads, 115.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuucaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacaaaaaucaaauauuuuacauauuacAAGGACCAAAUCCAAUAUGAAUCAauuuuucaaagacuaaaauaaaauacagaggaccaaaaccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((.(((((((((((...((.(((.(((((...(((((((((...(((((((...((((((..(((((.(((((((...))).)))).)))))............))))))...)))))))...)))))))))...))))).))).))...))))))))))).))))))))))))))))).)))))))))))))))).

Structure

-                u                 G           caa  c   u     cau         aaa       cua      ----------uc     a    -   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuu   uc uug aaaau   uucauauug   uuggucc   uaauau            auuuu gucc uca  
 |||||||||||||||| ||||||||||||||||| |||||||||||   || ||| |||||   |||||||||   |||||||   ||||||            ||||| |||| ||| u
 gggacguuuauauuuu uaaaccaaaaccaggag cauaaaauaaa   ag aac uuuua   AAGUAUAAC   AACCAGG   auuaua            uaaaa cagg agu  
a                u                 a           auc  a   u     ACU         CUA       AAc      cauuuuauaaac     a    g   u