miRBase entry: mtr-MIR2630g

Stem-loop mtr-MIR2630g


Accession
MI0011926
Description
Medicago truncatula mtr-MIR2630g precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630g
(2 sentences)

Sequence

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuucaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacaaaaaucaaauauuuuacauauuacaaggaccaaauccaauaugaaucaauuuuucaaagacuaaaauaaaauacagaggaccaaaaccaaauuuuuuauauuugcaggga
((((((((((((((((.(((((((((((((((((.(((((((((((...((.(((.(((((...(((((((((...(((((((...((((((..(((((.(((((((...))).)))).)))))............))))))...)))))))...)))))))))...))))).))).))...))))))))))).))))))))))))))))).)))))))))))))))).

Structure
-                u                 G           caa  c   u     cau         aaa       cua      ----------uc     a    -   u 
 cccugcaaauauagaa auuUGGUUUUGGUCCUU GUAUUUuguuu   uc uug aaaau   uucauauug   uuggucc   uaauau            auuuu gucc uca  
 |||||||||||||||| ||||||||||||||||| |||||||||||   || ||| |||||   |||||||||   |||||||   ||||||            ||||| |||| ||| u
 gggacguuuauauuuu uaaaccaaaaccaggag cauaaaauaaa   ag aac uuuua   aaguauaac   aaccagg   auuaua            uaaaa cagg agu  
a                u                 a           auc  a   u     acu         cua       aac      cauuuuauaaac     a    g   u 


Annotation confidence Not enough data
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Genome context
chr3: 28083847-28084075 [+]

Database links

Mature mtr-miR2630g

Accession MIMAT0013379
Description Medicago truncatula mtr-miR2630g mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796