Stem-loop sequence mtr-MIR2630l

Accession

MI0011931 (change log)

Description

Medicago truncatula miR2630l stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630l
(2 sentences)

Stem-loop

   -                u                             uaauc          -c    c        a         a      ----------uc           cau 
5'  cucugcaaauauagaa auuugguuuugguccuugguauuuuguuu     cuuguaaaau  auuu auauugaa uugguccuu uaauau            auuuuaguccu   u
    |||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||  |||| |||||||| ||||||||| ||||||            |||||||||||    
3'  gggacguuuauauuuu uaaaccaaaaccaggaaccauaaaacaaa     gaacauuuua  uaaa uauaacuu aaccaggaa auuaua            uaaaaucagga   u
   a                u                             uucaa          ac    -        a         c      caucuuauaaac           agg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 15543381-15543609 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011931

Mature sequence mtr-miR2630l

• Accession: MIMAT0013384
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).