Stem-loop sequence mtr-MIR2630t

Accession

MI0011939 (change log)

Description

Medicago truncatula miR2630t stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630t
(2 sentences)

Stem-loop

   -         a      u   u        u    g             a            cau   u     aaa       cua      ----------uc           cgu 
5'  cccugcaaa auagaa auu gguuuugg ccuu guauuuuguuuua uccuuguaaaau   uuc uauug   uuggucc   uaauau            auuuuaguccu   u
    ||||||||| |||||| ||| |||||||| |||| ||||||||||||| ||||||||||||   ||| |||||   |||||||   ||||||            |||||||||||    
3'  gggacguuu uauuuu uaa ccaaaacc ggaa cauaaaacaaaau aggaacauuuua   aag auaac   aaccagg   auuaua            uaaaaucaggg   u
   a         a      u   c        u    a             a            acu   u     cua       aac      caucuuauaaac           agu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 208036-208264 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011939

Mature sequence mtr-miR2630t

• Accession: MIMAT0013392
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).