miRBase entry: mtr-MIR2630v

Stem-loop mtr-MIR2630v


Accession
MI0011941
Description
Medicago truncatula mtr-MIR2630v precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630v
(2 sentences)

Sequence

cccuacaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaaucauuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccauaaccaaauuuuuuauauuugcauggc
.((..(((((((((((.((((((((.((((((((((((((((((((((.((.(((((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...))))))))).)).)))))))))))))))))))))).)))))))).)))))))))))...)).

Structure
c  -ua           u        U                      a  a         cau         aaa       cua      ----------uc          -   u 
 cc   caaauauagaa auuUGGUU UGGUCCUUGGUAUUUuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 gg   guuuauauuuu uaaaccaa accaggaaccauaaaacaaaau ag aacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
c  uac           u        u                      c  g         acu         cua       aac      caucuuauaaac          g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 38608657-38608885 [+]

Database links

Mature mtr-miR2630v

Accession MIMAT0013394
Description Medicago truncatula mtr-miR2630v mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796