Stem-loop sequence mtr-MIR2632c

Accession

MI0011945 (change log)

Description

Medicago truncatula miR2632c stem-loop

Gene family

MIPF0001203; MIR2632

Stem-loop

   -agac            c                      c    a        c                       aucauaauuacaucugauuaguaacuucagugaugaaaauucaagugaccuauauuuggagggaugaaagaccuauuuaagc 
5'      cauuugaauuuu gucccugaaguuacuaauccuu caau ugccccug aaauauuaaucauuugacuuuug                                                                                  a
        |||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||                                                                                  a
3'      guaaacuuaaaa cagggacuucaaugauuaggaa guua acgggggc uuuauaauuaguaaacugaaaac                                                                                  a
   aucca            u                      a    g        a                       gaggauuaauccaaaaaaaccacuccacccaacaguaaucgcugcaccacggguacaccguucacuacuaacccgauccacc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 46415896-46416217 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011945

Mature sequence mtr-miR2632c

• Accession: MIMAT0013398
• Sequence: 21 - ccugaaguuacuaauccuucca - 42
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).