Stem-loop sequence mtr-MIR2638b

Accession

MI0011952 (change log)

Description

Medicago truncatula miR2638b stem-loop

Gene family

MIPF0001203; MIR2632

Stem-loop

   g         c                                  aaaaua          caucugauuaguaacuuuagggaugaaaauucaaaugauauauauuugcagggacaaaagaccuauuuaagcc 
5'  uuacuaauc uuccaaucugccacugcaaauauuaaucauuuga      guccuaauua                                                                         a
    ||||||||| ||||||||||||||||||||||||||||||||||      ||||||||||                                                                          
3'  aaugauuag aagguuagacggugacguuuauaauuaguaaacu      caggauuaau                                                                         a
   -         u                                  gaaaac          caaaaaaaaacgacucuacccgauaguaaucgcugcaccacggauacaccguucacuacuaaccugcuccacc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 6758482-6758750 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2638b

• mtr-MIR2638b: chr5: 6758482-6758750 [-]
• mtr-MIR2638a: chr5: 6758481-6758749 [+]

Database links

• miRBase Tracker:MI0011952

Mature sequence mtr-miR2638b

• Accession: MIMAT0013405
• Sequence: 230 - augauuaauauuugcaguggc - 250
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).