miRBase entry: mtr-MIR2640

Stem-loop mtr-MIR2640


Accession
MI0011954
Description
Medicago truncatula mtr-MIR2640 precursor miRNA


Sequence

aUUCCUUGCCGGAGCUGGACUACagguaaaaguuaauucagagauacuauuguugcaaaauauaacuuucuuguacugaaauuaguuaggcuuaggcggcauaaaccuuuucuacacauuugacucaaugaauuuuuuaagggauuuaaagagcaaccauucuauuuucuugaauuacaugccaauauugagaaauaaguagaguacuuaccuagaauuaugauuacacuagugaguagccagccgcacgccucucucuuuaacuucugaggaauaguuuuugcaaagaa
.(((.((((.(((((((..((.((((....((((((...(((((......((((....))))((((((((.......)))...)))))(((...((((((.........((((((..((((..(((((((.....(((((((((.....((((......))))..)))))))))...........)))))))))))..))))))(((((((.(((.............))))))))))))).)))....))))))))..))))))))))))...))))))).)))).)))

Structure
a   C    C       -GA  A    uaaa      uuc     uacuauuguugcaaaauauaacuuucuuguacugaaauuaguua   -uua   -   -------------------------auaaaccuu      ac    ga       ------aauuu         uuuaa    ca 
 UUC UUGC GGAGCUG   CU Cagg    aguuaa   agaga                                            ggc    ggc ggc                                  uucuac  auuu  cucaaug           uuuaaggga     agag  a
 ||| |||| |||||||   || ||||    ||||||   |||||                                            |||    ||| |||                                  ||||||  ||||  |||||||           |||||||||     ||||   
 aag aacg uuuugau   ga gucu    ucaauu   ucucu                                            ccg    ccg ccg                                  gagaug  uaaa  gaguuau           aaguucuuu     ucuu  c
-   a    u       aag  -    ----      -uc     --------------------------------------------   cacg   a   augagugaucacauuaguauuaagauccauucau      aa    --       aaccguacauu         ---ua    ac 


Annotation confidence Not enough data
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Genome context
chr1: 33982196-33982485 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2640
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2640

Accession MIMAT0013407
Description Medicago truncatula mtr-miR2640 mature miRNA
Sequence 2 - UUCCUUGCCGGAGCUGGACUAC - 23
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796