Stem-loop sequence mtr-MIR2641

Accession

MI0011956 (change log)

Description

Medicago truncatula miR2641 stem-loop

Stem-loop

   uguuugauccuuuacguuuauucuucguuuuagguaggagauguaaauuucuucaugcaaauccucgugaaaagaaaaaaaaaaaaacaucagcauggaaggaacauagaaaa      u    -    g   g   accccu 
5'                                                                                                                  ggagaa aaga ccaa uug auc      a
                                                                                                                    |||||| |||| |||| ||| |||      a
3'                                                                                                                  ucucuu uucu gguu aac uag      a
   -------------------------------------------------------uugggaaaguaaguagguacuuuuuuaguuaguguuaucuuuagcuaacauggaauac      -    a    g   -   aaaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 1951990-1952220 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011956

Mature sequence mtr-miR2641

• Accession: MIMAT0013409
• Sequence: 2 - guuugauccuuuacguuuau - 21
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).