Stem-loop sequence mtr-MIR2644

Accession

MI0011959 (change log)

Description

Medicago truncatula miR2644 stem-loop

Stem-loop

   u       uug    agug        u ug           caa         gguuacuagcagcagcgaaggguauuuagguuauugaaauaucaucaaaaauaaac 
5'  cgugucg   acca    gauacacc u  aucugaagugu   ugcuacaua                                                        u
    |||||||   ||||    |||||||| |  |||||||||||   |||||||||                                                        u
3'  gcacagc   uggu    cugugugg a  uagacuucaca   acgauguau                                                        u
   u       cua    ----        u gu           acc         uagaauuacauaguaagauuacacuuugagaauucucugaaaccacaaaacaacug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 17526726-17526944 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011959

Mature sequence mtr-miR2644

• Accession: MIMAT0013412
• Sequence: 183 - cacuucagauugauggugugu - 203
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).