miRBase entry: mtr-MIR2644

Stem-loop mtr-MIR2644


Accession
MI0011959
Description
Medicago truncatula mtr-MIR2644 precursor miRNA


Sequence

ucgugucguugaccaaguggauacaccuuugaucugaagugucaaugcuacauagguuacuagcagcagcgaaggguauuuagguuauugaaauaucaucaaaaauaaacuuugucaacaaaacaccaaagucucuuaagaguuucacauuagaaugauacauuaagauuauguagcaccaaCACUUCAGAUUGAUGGUGUGUcugguauccgacacgu
.(((((((...((((....((((((((.((((((((((((((...((((((((((.......((....))((..(((((((.........))))))).))........((((((............)))))).((((((..((.(((........))).)).))))))))))))))))...)))))))))))))).))))))))))))...))))))).

Structure
u       uug    agug        u              caa          guuacuagcagcagcgaaggguauuuagguuauugaaauaucaucaaaaauaaacuuugucaacaaaacaccaaaguc      ga  u   cau 
 cgugucg   acca    gauacacc uugaucugaagugu   ugcuacauag                                                                              ucuuaa  gu uca   u
 |||||||   ||||    |||||||| ||||||||||||||   ||||||||||                                                                              ||||||  || |||    
 gcacagc   uggu    cUGUGUGG AGUUAGACUUCACa   acgauguauu                                                                              agaauu  ca agu   a
u       cua    ----        U              acc          ------------------------------------------------------------------------------      -a  u   aag 


Annotation confidence Not enough data
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Genome context
chr4: 17526726-17526944 [+]

Database links

Mature mtr-miR2644

Accession MIMAT0013412
Description Medicago truncatula mtr-miR2644 mature miRNA
Sequence 183 - CACUUCAGAUUGAUGGUGUGU - 203
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796