Stem-loop sequence mtr-MIR2647a

Accession

MI0011964 (change log)

Description

Medicago truncatula miR2647a stem-loop

Gene family

MIPF0000887; MIR2647

Stem-loop

   ----------------------------------------------------------------------------aauucacggggacgaaccuccuucg     ag --u   u     cu    aua    ua 
5'                                                                                                      uugaa  u   ugc uuauu  uuug   uauc  u
                                                                                                        |||||  |   ||| |||||  ||||   ||||  c
3'                                                                                                      aacuu  a   acg aauga  gaac   auag  c
   aaguuguccccguugggagggagguagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaacu     ga uuu   u     ag    ---    ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 10427955-10428148 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011964

Mature sequence mtr-miR2647a

• Accession: MIMAT0013417
• Sequence: 2 - auucacggggacgaaccuccu - 22
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).