Stem-loop sequence mtr-MIR2649

Accession

MI0011968 (change log)

Description

Medicago truncatula miR2649 stem-loop

Stem-loop

   a   -uga ug a    ag gg    a                     c  a 
5'  gcu    u  u agca  u  auaa uggcaccuuuuguaagcucuu au u
    |||    |  | ||||  |  |||| ||||||||||||||||||||| ||  
3'  ugg    a  a uugu  g  uauu accguggaaaacauucgagaa ua u
   a   uaua gu a    gu ag    a                     a  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 19670625-19670729 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2649

• mtr-MIR2649: chr6: 19670625-19670729 [+]
• mtr-MIR2678: chr6: 19671276-19671704 [-]

Database links

• miRBase Tracker:MI0011968

Mature sequence mtr-miR2649

• Accession: MIMAT0013421
• Sequence: 69 - aaaggugccaauuaugagugu - 89
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).