miRBase entry: mtr-MIR2650

Stem-loop mtr-MIR2650


Accession
MI0011969
Description
Medicago truncatula mtr-MIR2650 precursor miRNA


Sequence

agucucaauuauuucaAACUUAAAUAUGUUUUCAGUCCcuacauuuugcgugacuuuaaagaauaaucuuuauauuuuagggauuuuaaaaacauuuauugaaauguaaggacuauuuuuaaaagucacgcaaaaugucggaacgaaaaacauauuuaaccuuaaaauauuuggaacc
.((.((((.(((((.((..(((((((((((((..((.((.(((((((((((((((((.(((((((.((((((((((((((..................)))))))))))))).))))))).))))))))))))))))).)).))..)))))))))))))..)).))))).)))).)).

Structure
a  c    u     c  AC             CA  C  u                 a       a              ggauuuua 
 gu ucaa uauuu aA  UUAAAUAUGUUUU  GU Cc acauuuugcgugacuuu aagaaua ucuuuauauuuuag        a
 || |||| ||||| ||  |||||||||||||  || || ||||||||||||||||| ||||||| ||||||||||||||         
 ca gguu auaaa uu  aauuuauacaaaa  ca gg uguaaaacgcacugaaa uuuuuau aggaauguaaaguu        a
c  a    u     a  cc             ag  a  c                 a       c              auuuacaa 


Annotation confidence Not enough data
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Genome context
chr5: 3163401-3163578 [+]

Database links

Mature mtr-miR2650

Accession MIMAT0013422
Description Medicago truncatula mtr-miR2650 mature miRNA
Sequence 17 - AACUUAAAUAUGUUUUCAGUCC - 38
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796