miRBase entry: mtr-MIR2651

Stem-loop mtr-MIR2651


Accession
MI0011970
Description
Medicago truncatula mtr-MIR2651 precursor miRNA


Sequence

auuggggugcaauauaauuuaaugcaggcauacuagucaaauuauuugguuuaauuuccccuuuugagguuuuuuucuuuuguacauuuggaaauugaaucaaauaaUUUGAUUGGUAUGCCUGCAUUaaauuguauugugccccaa
.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((......((((......))))..........))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
a                                                          ----ccuuuu    uu 
 uuggggugcaauauaauuuaaugcaggcauacuagucaaauuauuugguuuaauuucc          gagg  u
 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||   
 aaccccguguuauguuaaaUUACGUCCGUAUGGUUAGUUUaauaaacuaaguuaaagg          uucu  u
-                                                          uuuacauguu    uu 


Annotation confidence Not enough data
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Genome context
chr2: 31685421-31685567 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2651
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2651

Accession MIMAT0013423
Description Medicago truncatula mtr-miR2651 mature miRNA
Sequence 108 - UUUGAUUGGUAUGCCUGCAUU - 128
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796