miRBase entry: mtr-MIR2652a

Stem-loop mtr-MIR2652a


Accession
MI0011971
Description
Medicago truncatula mtr-MIR2652a precursor miRNA
Gene family
MIPF0000819; MIR2652


Sequence

gcgauuauggugcauaaggaaauucuuaugcacccugcauaaauccauaaauaguuuuggaguacaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcagggugcuggaaaccauuaaguacaucuaaugguuuuggaguacaacucacagaaaccauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaucg
.((((((((((((((((((((((((((((((((((((((((((((((.((((.((((((((((..........((((((((((........))))))))))............((((((((.......))))...))))..(((((.((((((((((........))))))))))..))))).)))).))).))).)))).))))))))))))))))))))))))))))))))))))))))))))))

Structure
g                                              u    a   -   -    acaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcagg     -g          agu 
 cgauuauggugcauaaggaaauucuuaugcacccugcauaaaucca aaau guu uug gagu                                                                              gugcu  gaaaccauua   a
 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||                                                                              |||||  ||||||||||    
 gcuaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuuaggu uuua caa gac cuca                                                                              cauga  uuuugguaau   c
-                                              c    c   a   a    -----------------------------------------------------------------------------a     gg          cua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 30023475-30023721 [-]

Database links

Mature mtr-miR2652a

Accession MIMAT0013424
Description Medicago truncatula mtr-miR2652a mature miRNA
Sequence 208 - UAUGCAGGGUGCAUAAGGAUU - 228
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796