Stem-loop mtr-MIR2652c

Accession

MI0011973

Description

Medicago truncatula mtr-MIR2652c precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

gcgguuaugguguauaacgaaauccuuaugcacccugcauaaauucagaaaugguuuuggaguacaacuuacaaaaaccauuuucccaauaaaaugguuuuugcauaauuuuaugcaaggugcuggaaauccuuaugcagaguacuggaaagcauuaaguacaacucacauaaaccauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcacuauagucg
.((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((...(((((...((((((((((......))))))))))(((((((....))))))).(((((((....))...(.(((....))).).))))))))))...)))).)).))))))))))))))))))))))))))))))))))))))).))))))))))))))))

Structure

g                c                                       -  -    aca     ----------------------------------------------------caa          cc 
 cgguuaugguguauaa gaaauccuuaugcacccugcauaaauucagaaaugguuu ug gagu   acuua                                                       aaaccauuuu  c
 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||   |||||                                                       ||||||||||   
 gcugauaucacguauu cuUUAGGAAUACGUGGGACGUAUuuaggucuuuaccaaa ac cuca   ugaau                                                       uuugguaaaa  a
-                c                                       u  a    aca     uacgaaaggucaugagacguauuccuaaaggucguggaacguauuuuaauacguu          ua 

Annotation confidence Not enough data

Genome context

chr2: 12812990-12813216 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2652c

Mature mtr-miR2652c

• Accession: MIMAT0013426
• Description: Medicago truncatula mtr-miR2652c mature miRNA
• Sequence: 188 - UAUGCAGGGUGCAUAAGGAUU - 208
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796