Stem-loop sequence mtr-MIR2652c

Accession

MI0011973 (change log)

Description

Medicago truncatula miR2652c stem-loop

Gene family

MIPF0000819; MIR2652

Stem-loop

   g  gu            c                                       -  -    aca     caaaaaccauuuucccaauaaaaugguuuuugcauaauuuu 
5'  cg  uaugguguauaa gaaauccuuaugcacccugcauaaauucagaaaugguuu ug gagu   acuua                                         a
    ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||   |||||                                          
3'  gc  auaucacguauu cuuuaggaauacgugggacguauuuaggucuuuaccaaa ac cuca   ugaau                                         u
   -  ug            c                                       u  a    aca     uacgaaaggucaugagacguauuccuaaaggucguggaacg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 12812990-12813216 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2652c

• mtr-MIR2652c: chr2: 12812990-12813216 [-]
• mtr-MIR2652d: chr2: 12812989-12813215 [+]

Database links

• miRBase Tracker:MI0011973

Mature sequence mtr-miR2652c

• Accession: MIMAT0013426
• Sequence: 188 - uaugcagggugcauaaggauu - 208
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).