Stem-loop mtr-MIR2652e

Accession

MI0011975

Description

Medicago truncatula mtr-MIR2652e precursor miRNA

Sequence

gcgauuauggugcauaaggaaauccuuaugcacccugcauaaauccagaaaugauuuuggaguacaacucacauaaaucauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcauggugcugaaaaccaugaaguacaucuaaugguuuugaaguacaacucacagaaaccauuucuagauuUAUGCAGGGUGCAUAAGGAUUuucuuaugcaccauaaccg
.((.(((((((((((((((((((((((((((((((((((((((((.(((((((.(((((((((.....(((...(((((((((........))))))))))))........((((((((((.......))))...))))))(((((.((((((((..((.....)).))))))))..))))).)))).)))))..))))))).))))))))))))))))))))))))))))))))))))))))).))

Structure

g  a                                         c       -a     -    acaacucacauaaaucauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcaug     -g        ga  u 
 cg uuauggugcauaaggaaauccuuaugcacccugcauaaauc agaaaug  uuuug gagu                                                                              gugcu  aaaaccau  ag a
 || ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||                                                                              |||||  ||||||||  || c
 gc aauaccacguauucuuUUAGGAAUACGUGGGACGUAUuuag ucuuuac  aagac cuca                                                                              cauga  uuuuggua  uc a
-  c                                         a       ca     a    -----------------------------------------------------------------------------a     ag        -a  u 

Annotation confidence Low

Genome context

chr4: 31385772-31386018 [+]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796