miRBase entry: mtr-MIR2652e

Stem-loop mtr-MIR2652e


Accession
MI0011975
Description
Medicago truncatula mtr-MIR2652e precursor miRNA
Gene family
MIPF0000819; MIR2652


Sequence

gcgauuauggugcauaaggaaauccuuaugcacccugcauaaauccagaaaugauuuuggaguacaacucacauaaaucauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcauggugcugaaaaccaugaaguacaucuaaugguuuugaaguacaacucacagaaaccauuucuagauuUAUGCAGGGUGCAUAAGGAUUuucuuaugcaccauaaccg
.((.(((((((((((((((((((((((((((((((((((((((((.(((((((.(((((((((.....(((...(((((((((........))))))))))))........((((((((((.......))))...))))))(((((.((((((((..((.....)).))))))))..))))).)))).)))))..))))))).))))))))))))))))))))))))))))))))))))))))).))

Structure
g  a                                         c       -a     -    acaacucacauaaaucauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcaug     -g        ga  u 
 cg uuauggugcauaaggaaauccuuaugcacccugcauaaauc agaaaug  uuuug gagu                                                                              gugcu  aaaaccau  ag a
 || ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||                                                                              |||||  ||||||||  || c
 gc aauaccacguauucuuUUAGGAAUACGUGGGACGUAUuuag ucuuuac  aagac cuca                                                                              cauga  uuuuggua  uc a
-  c                                         a       ca     a    -----------------------------------------------------------------------------a     ag        -a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 31385772-31386018 [+]

Database links

Mature mtr-miR2652e

Accession MIMAT0013428
Description Medicago truncatula mtr-miR2652e mature miRNA
Sequence 208 - UAUGCAGGGUGCAUAAGGAUU - 228
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796