Stem-loop mtr-MIR2652g

Accession

MI0011977

Description

Medicago truncatula mtr-MIR2652g precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

ugguuacggugcauaaggaaauucuuaugcacccugcauaaauccagaaaugauuucugugagcuguacuccaaaaccauuagauguaauuaaugguuuccagcacucugcauaaauuccagcccaauuaugcuaaaaccauuuugcuauggaaaugguuucugugaguuauacuccaaaaccauuucuaaauuUAUGCAGGGUGCAUAAGGAUUuucuuaugcaccauaaccg
.(((((.((((((((((((((((((((((((((((((((((((..(((((((.(((.((.(((.((((((((((((((((((........)))))))))..........((((((............))))))..((((((((((......)))))))))).)).))).)))))))))))).)))))))..)))))))))))))))))))))))))))))))))))).))))).

Structure

u     c                                    cc       a   c  u   c    -   -  aaaccauuagauguaauuaaugguuuccagcacucugcauaaauuccagcccaauuaugcua          gc 
 gguua ggugcauaaggaaauucuuaugcacccugcauaaau  agaaaug uuu ug gag ugua cuc ca                                                              aaaccauuuu  u
 ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||| || ||| |||| ||| ||                                                              ||||||||||   
 ccaau ccacguauucuuUUAGGAAUACGUGGGACGUAUuua  ucuuuac aaa ac cuc auau gag gu                                                              uuugguaaag  a
g     a                                    aa       c   -  -   -    u   u  -------------------------------------------------------------c          gu 

Annotation confidence Not enough data

Genome context

chr5: 38127389-38127622 [+]

Mature mtr-miR2652g

• Accession: MIMAT0013430
• Description: Medicago truncatula mtr-miR2652g mature miRNA
• Sequence: 195 - UAUGCAGGGUGCAUAAGGAUU - 215
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796