miRBase entry: mtr-MIR2652j

Stem-loop mtr-MIR2652j


Accession
MI0011980
Description
Medicago truncatula mtr-MIR2652j precursor miRNA
Gene family
MIPF0000819; MIR2652


Sequence

agcaugguuuuuuuuguugagaaaauccuuaugcacucugcauaaauccagaaaugguuuuggaguacaauucagaaaccauuuccacagcaaaaugguuuugauauaauuuuaugcagggugcuguaaacuauuaaguacaucuaaugauuuugaaauacaacucacaaaaaucauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaaaaccgcgc
.((.((((((....(((((((.((((((((((((((((((((((((((((((((((((((((((((....((((((((((((((........))))))))))............(((((....))))).(((....)))..(((....)))..)))).....)))).).))))))))))))))))))))))))))))))))))))))).)))).))))))))).))

Structure
a  a      uuuu   -    a                                       - -    -acaa    ---------------------------------------------------          cca 
 gc ugguuu    ugu ugag aaauccuuaugcacucugcauaaauccagaaaugguuuu g gagu     uuca                                                   gaaaccauuu   c
 || ||||||    ||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||     ||||                                                   ||||||||||    
 cg gccaaa    acg auuc uUUAGGAAUACGUGGGACGUAUuuaggucuuuacuaaaa c cuca     aagu                                                   uuuugguaaa   a
-  c      ----   u    c                                       a a    acaua    uuuaguaaucuacaugaauuaucaaaugucgugggacguauuuuaauauag          acg 


Annotation confidence Not enough data
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Genome context
chr8: 17937327-17937552 [-]

Database links

Mature mtr-miR2652j

Accession MIMAT0013433
Description Medicago truncatula mtr-miR2652j mature miRNA
Sequence 187 - UAUGCAGGGUGCAUAAGGAUU - 207
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796