Stem-loop mtr-MIR2655d

Accession

MI0011990

Description

Medicago truncatula mtr-MIR2655d precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cccauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucaguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguugagggaccaaauuaauacuaauuaaauaaguuaagggaccaaacuaauacuaauuaaauaaguuaagagaccaaaauuuaacauuuuuuuaaauuaaauuaacagaaaggaccaaaccgauacuuuaaauaaaguuaagggaccuaaacggacuuuuuauuacuuauggga
((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((.(((((((.((((((((..((.......(((..(((.(((.(((.(((...((.......))...))).))).))).))))))....))..)))))))).))))))).)))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure

-                                                    a                          c       c        ga  gaccaaa   au   a   a   a   uaa  ga 
 cccauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguauc guuugguccuuucuguuaauuuaauu aaaaaaa guuaaguu  gg       uua  acu auu aau agu   gg  c
 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||  ||       |||  ||| ||| ||| |||   ||  c
 ggguauucauuauuuuucaggcaaauccagggaauugaaauaaauuucauag caaaccaggaaagacaauuaaauuaa uuuuuuu caauuuaa  cc       aau  uga uaa uua uca   uc  a
a                                                    c                          a       a        aa  ---agag   --   a   a   a   uaa  aa 

Annotation confidence Not enough data

Genome context

chr1: 23673623-23673889 [+]

Mature mtr-miR2655d

• Accession: MIMAT0013443
• Description: Medicago truncatula mtr-miR2655d mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796