miRBase entry: mtr-MIR2655e

Stem-loop mtr-MIR2655e


Accession
MI0011991
Description
Medicago truncatula mtr-MIR2655e precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

uccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugauccuuucuguuaauuuaauucaaaaaaaauguuaaguuuagggaccaaacuaauacuaauuaaauaagauaagggaucaaaauuuaacauguuuuuugaauuaaauuuuuuuaauaaaguuuaggggccaaaacagaccuuuuauuacuuauggga
((((((((((((((((((((.((((.(((((((.(((((((((.((((.(((.....))).)))).....((((((((((((((((.(((((((((((.((..((..........................))..)).))))))))))).)))))))))))))))).....))))))))).))))))).)))).)))))))))))))))))))).

Structure
-                    C    A       U         uaaaguaucgguuugauccuuucuguu                a           a  ga  aaacuaauacua 
 uccauaaguaauaaaagguc GUUU GGUCCCU AACUUUAuu                           aauuuaauucaaaaaa auguuaaguuu gg  cc            a
 |||||||||||||||||||| |||| ||||||| |||||||||                           |||||||||||||||| ||||||||||| ||  ||             
 ggguauucauuauuuuccag caaa ccgggga uugaaauaa                           uuaaauuaaguuuuuu uacaauuuaaa cu  gg            u
a                    a    a       u         ----------------------uuuuu                g           a  ag  aauagaauaaau 


Annotation confidence Not enough data
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Genome context
chr2: 13982332-13982546 [+]

Database links

Mature mtr-miR2655e

Accession MIMAT0013444
Description Medicago truncatula mtr-miR2655e mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796