Stem-loop sequence mtr-MIR2655h

Accession

MI0011994 (change log)

Description

Medicago truncatula miR2655h stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   c                        a                 u       ca     a  a   a             a       c         a   a  aaacuaauacua 
5'  ucauaaguaauaaaagguccguuu ggucccuuaacuuuauu aaaguau  guuug uc uuu uguuaauuuaauu aaaaaaa guuaaguuu uga cc            a
    |||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||| || ||| ||||||||||||| ||||||| ||||||||| ||| ||            u
3'  gguauuuauuauuuuccaggcaaa ucagggaauugaaauaa uuucaua  caaac ag aaa acaauuaaauuaa uuuuuuu caauuuaaa acu gg            u
   a                        a                 c       ac     c  g   g             a       a         -   a  gaauagaauaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 17456062-17456295 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011994

Mature sequence mtr-miR2655h

• Accession: MIMAT0013447
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).