Stem-loop sequence mtr-MIR2655j

Accession

MI0011996 (change log)

Description

Medicago truncatula miR2655j stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -   c                   uua     c           u              a        a                            uagcgaccaaauuaauacuaauugaauaaguuaagg 
5'  ccu uaaguaauaaaagguccgu   ggucc uuaacuuuauu aaaguaucgguuug uccuuucu uuaauuuaauucaaaaaaauguuaaguu                                    g
    ||| |||||||||||||||||||   ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||                                     
3'  ggg auucauuauuuuccaggca   ccagg aauugaaauaa uuucauagucaaac aggaaaga aauuaaauuaaguuuuuuuacaauuuaa                                    a
   a   u                   uaa     a           c              c        c                            aaccagggaauagaauaaauuaaucauaaucaaacc 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 12695849-12696115 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011996

Mature sequence mtr-miR2655j

• Accession: MIMAT0013449
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).