Stem-loop sequence mtr-MIR2655n

Accession

MI0012000 (change log)

Description

Medicago truncatula miR2655n stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -cc             cu  c                       u              a                            c     c   a  ga  aaacuaauacua 
5'    cauaaguaaugaa  gu cguuuaggucccuuaacuuuauu aaaguaucgguuug uccuuucuguuaauuuaauucaaaaaaa guuaa uuu gg  cc            a
      |||||||||||||  || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||  ||             
3'    guauucauuauuu  ca gcaaauccagggaauugaaauaa uuucauagucaaac aggaaagacaauuaaauuaaguuuuuuu caauu aaa cc  gg            u
   aga             uc  c                       c              c                            a     u   a  ag  aauagaauaaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 677525-677759 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2655n

• mtr-MIR2655o: chr7: 677526-677760 [+]
• mtr-MIR2655n: chr7: 677525-677759 [-]

Database links

• miRBase Tracker:MI0012000

Mature sequence mtr-miR2655n

• Accession: MIMAT0013453
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).