Stem-loop mtr-MIR2655n

Accession

MI0012000

Description

Medicago truncatula mtr-MIR2655n precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cccauaaguaaugaacugucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugauccuuucuguuaauuuaauucaaaaaaacguuaacuuuagggaccaaacuaauacuaauuaaauaagauaagggaccaaaauuuaacauuuuuuugaauuaaauuaacagaaaggaccaaacugauacuuucaauaaaguuaagggaccuaaacgcaccuuuuauuacuuaugaga
..(((((((((((((..((.(((((((((((((((((((((((.((((((((((((((.((((((((((((((((((((((((((((.(((((.(((.((..((..........................))..)).))).))))).)))))))))))))))))))))))))))).)))))))))))))).))))))))))))))))))))))).))..)))))))))))))...

Structure

-cc             cu  c                       u              a                            c     c   a  ga  aaacuaauacua 
   cauaaguaaugaa  gu CGUUUAGGUCCCUUAACUUUAuu aaaguaucgguuug uccuuucuguuaauuuaauucaaaaaaa guuaa uuu gg  cc            a
   |||||||||||||  || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||  ||             
   guauucauuauuu  ca gcaaauccagggaauugaaauaa uuucauagucaaac aggaaagacaauuaaauuaaguuuuuuu caauu aaa cc  gg            u
aga             uc  c                       c              c                            a     u   a  ag  aauagaauaaau 

Annotation confidence Not enough data

Genome context

chr7: 677525-677759 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2655n

Mature mtr-miR2655n

• Accession: MIMAT0013453
• Description: Medicago truncatula mtr-miR2655n mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796