Stem-loop mtr-MIR2655o

Accession

MI0012001

Description

Medicago truncatula mtr-MIR2655o precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cucauaaguaauaaaaggugCGUUUAGGUCCCUUAACUUUAuugaaaguaucaguuugguccuuucuguuaauuuaauucaaaaaaauguuaaauuuuggucccuuaucuuauuuaauuaguauuaguuuggucccuaaaguuaacguuuuuuugaauuaaauuaacagaaaggaucaaaccgauacuuuaaauaaaguuaagggaccuaaacggacaguucauuacuuauggga
((((((((((((.((..((.(((((((((((((((((((((((.((((((((.((((((((((((((((((((((((((((((((((((((((.(((.((.((.......((((.....)))).......)).))..))).)))))))))))))))))))))))))))))))))))))))).)))))))).))))))))))))))))))))))).))..)).)))))))))))).

Structure

-            a  ag  g                       g        a                                        a   -u  u  cuuaucu    u 
 cucauaaguaau aa  gu CGUUUAGGUCCCUUAACUUUAuu aaaguauc guuugguccuuucuguuaauuuaauucaaaaaaauguuaa uuu  gg cc       uauu a
 |||||||||||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||  || ||       |||| a
 ggguauucauua uu  ca gcaaauccagggaauugaaauaa uuucauag caaacuaggaaagacaauuaaauuaaguuuuuuugcaauu aaa  cc gg       auga u
a            c  ga  g                       a        c                                        g   uc  u  uuugauu    u 

Annotation confidence Not enough data

Genome context

chr7: 677526-677760 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2655o

Mature mtr-miR2655o

• Accession: MIMAT0013454
• Description: Medicago truncatula mtr-miR2655o mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796