Stem-loop sequence mtr-MIR2655o

Accession

MI0012001 (change log)

Description

Medicago truncatula miR2655o stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -            a  ag  g                       g        a                                        a   u  uc  uu  -cu    u 
5'  cucauaaguaau aa  gu cguuuaggucccuuaacuuuauu aaaguauc guuugguccuuucuguuaauuuaauucaaaaaaauguuaa uuu gg  cc  au   uauu a
    |||||||||||| ||  || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||  ||  ||   |||| a
3'  ggguauucauua uu  ca gcaaauccagggaauugaaauaa uuucauag caaacuaggaaagacaauuaaauuaaguuuuuuugcaauu aaa cc  gg  ug   auga u
   a            c  ga  g                       a        c                                        g   u  cu  uu  auu    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 677526-677760 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2655o

• mtr-MIR2655n: chr7: 677525-677759 [-]
• mtr-MIR2655o: chr7: 677526-677760 [+]

Database links

• miRBase Tracker:MI0012001

Mature sequence mtr-miR2655o

• Accession: MIMAT0013454
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).