Stem-loop sequence mtr-MIR2657

Accession

MI0012004 (change log)

Description

Medicago truncatula miR2657 stem-loop

Stem-loop

   c   auuccuug   uu   g    a        ----     aaauuucaaguuauugugcaagcaagaagugugacuccaaggggaagauaccaauuuggagaacugcaauggacaaauggaaaacaca 
5'  cag        aca  caa aaaa uggugaaa    agaag                                                                                        u
    |||        |||  ||| |||| ||||||||    |||||                                                                                         
3'  guc        ugu  guu uuuu gcuacuuu    ucuuc                                                                                        u
   u   guuguuca   -u   g    a        auug     guaugaucauauuagguuauuaugguguaauuuagguugauaaaccuuauuagaaaguaaacgcaacuugucauugcccugaggaaug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 23479463-23479721 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012004

Mature sequence mtr-miR2657

• Accession: MIMAT0013457
• Sequence: 222 - uguuauuucaucgauuuuguug - 243
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).