Stem-loop mtr-MIR2659e

Accession

MI0012011

Description

Medicago truncatula mtr-MIR2659e precursor miRNA

Gene family

MIPF0000830; MIR2659

Sequence

aucuacuucaaaucaauggcaucuucaaguucugcuggugguucuucaucaaauauggauauagauacuccagcauaugaaaucaaaggaagaacuaugucuauugaggaauaggaguuaaucauucaagcggaaaauccaguggauuucacuucucuaacucaCCAUGGGUGCGACUUGGUAAGauucuacaagaagcagaa
.(((.((((.......(((.(((((((((((.((((.(((((((((((......((((((((((.(..(((................)))..).))))))))))))))))....((((((.......(((.(((..((((...))))))).)))...))))))))))).)))).)))))))..)))).)))...)))).))).

Structure

a   a    aaaucaa   c    --       c    g     -----------------------------------------------------      ucaaau          a ac   agcauau 
 ucu cuuc       ugg aucu  ucaaguu ugcu guggu                                                     ucuuca      auggauauag u  ucc       g
 ||| ||||       ||| ||||  ||||||| |||| |||||                                                     ||||||      |||||||||| |  |||        
 aga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                     aggagu      uaucuguauc a  agg       a
a   c    ----aac   u    AU       C    G     cucaaucucuucacuuuaggugaccuaaaaggcgaacuuacuaauugaggaua      ------          a ga   aaacuaa 

Annotation confidence Not enough data

Genome context

chr3: 11639258-11639460 [-]

Mature mtr-miR2659e

• Accession: MIMAT0013464
• Description: Medicago truncatula mtr-miR2659e mature miRNA
• Sequence: 165 - CCAUGGGUGCGACUUGGUAAG - 185
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796