miRBase entry: mtr-MIR2665

Stem-loop mtr-MIR2665


Accession
MI0012019
Description
Medicago truncatula mtr-MIR2665 precursor miRNA


Sequence

uaugaagaggagUGAUUUCAGGUCAAGAAUUGAuccaauaccaccccucaaugaagaaaauggaagagaaaacuagggucgguuuguuggaaagggauauauaggauugucau
...........(((((.((..........((..((((((((((((((((................))).......)))).)))..))))))..)).........))..)))))

Structure
uaugaagagga     -U  AGGUCAAGAA  GA      --   -    -------   aaugaag 
           gUGAU  UC          UU  uccaau  acc accc       cuc       a
           |||||  ||          ||  ||||||  ||| ||||       |||        
           uacug  ag          gg  agguug  ugg uggg       gag       a
-----------     uu  -gauauauag  aa      uu   c    aucaaaa   aagguaa 


Annotation confidence Not enough data
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Genome context
chr5: 16554970-16555082 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mtr-MIR2665
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2665

Accession MIMAT0013472
Description Medicago truncatula mtr-miR2665 mature miRNA
Sequence 13 - UGAUUUCAGGUCAAGAAUUGA - 33
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796